Output details
11 - Computer Science and Informatics
Royal Holloway, University of London
Article title
Detecting overlapping protein complexes in protein-protein interaction networks
Type
D - Journal article
Title of journal
Nature Methods
Article number
-
Volume number
9
Issue number
5
First page of article
471
ISSN of journal
1548-7091
Year of publication
2012
Number of additional authors
2
Additional information
<28>This paper presents what is currently the best algorithm for overlapping clustering on weighted large scale networks. New web-based version presented at ISMB 2013. The algorithm is now widely used (4061 downloads of the software so far, as counted from the official Cytoscape website). Scientists have been using it outside biology, for example for detecting communities in social networks. We have applied it to the largest ever human protein interaction network (paper published in Cell, output 2). The algorithm was developed entirely in Paccanaro’s lab and subsequently validated by Haiyuan Yu at Cornell University. Paccanaro is senior corresponding author.
Interdisciplinary
-
Cross-referral requested
-
Research group
B - Computer Learning Research Centre
Citation count
34
Proposed double-weighted
No
Double-weighted statement
-
Reserve for a double-weighted output
No
Non-English
No
English abstract
-
