Output details
11 - Computer Science and Informatics
University of Nottingham
CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images
<23> The CellSeT software utilizes tissue-scale structure to help segment individual cells in confocal laser microcope images. This paper describes the novel approach, and shows how CellSeT can be used to quantify fluorescence of hormone-responsive nuclear reporters, determine membrane protein polarity, extract cell and tissue geometry for use in later modelling, and take many additional biologically relevant measures using an extensible plug-in toolset. To date, the software has been downloaded more than 300 times. The Plant Cell is one of the top journals in plant biology, with a five-year impact factor of 10.125.